There are some things, but really not that much. Especially if you are not a gamer.
The typical desktop today probably has, at least, 10X the CPU power, 20X the RAM, and 1000X the disk space.
How many mandatory upgrades since then? Especially if you have been running MacOS or Windows.
If you had high speed internet 25 years ago, there is probably not that much more you can do.
Just an OT random thought.
One thing that was largely missing from commodity desktop computers 25 years ago was a ZFS filesystem.
ZFS added some genuinely important functionality that we now take for granted: snapshots, easy cloning, data integrity and zfs send/zfs receive for efficient replication and backups.
Interestingly, ZFS itself was introduced almost exactly 25 years ago, but that doesn't count as the typical personal computer. ZFS initially ran only on Sun systems, which were workstations and servers rather than PCs.
So while the basic things you do with a desktop computer haven't changed all that dramatically, the storage layer has gained some pretty significant capabilities since then.
Another major addition is virtualization on commodity desktops.
For example, FreeBSD's Bhyve first appeared in FreeBSD 10 in 2014, so it's only about 12 years old. Today, running multiple virtual machines on a desktop is almost routine, whereas this was certainly not a typical capability of a commodity PC 25 years ago. Hardware virtualization on Intel came out in 2005, this is just 21 years ago.
So I’d add desktop virtualization to the list alongside ZFS. Some of the most significant improvements are not only having more CPU, RAM and disk space, but about what the system can actually do with those resources.