That's the cleanest and easiest to do. It's all doable by hand but there's a lot of ZFS datasets (with specific options) that should be created and the installer does it all automagically for you. And it's always nice to start with a fresh new install every once in a while. Definitely create a backup of the old system, you can selectively restore some items from it, like specific configuration files. Files from your home directory perhaps.
I encountered the same situation.
I backed up my data.
The system configuration /usr/local/* & co.
I reinstalled the system in new filesystem zfs and restored datas and the third-party packages from a .txt list
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