I want to install Ubuntu in /compat folder and check some software with glibc1.15 dependency. Can I somehow tell the application to use an alternative Linux installation? I don't want to break the existing /compat/linux.
I don't think that's possible. The /compat/linux infrastructure is all CentOS 6.6 via the ports collection. Testing an application with Ubuntu, if possible, won't give any indication of how it may work on a normal FreeBSD system because of the CentOS infrastructure.
What you can do, however, is potentially use a jail. Here is a guide on how to use a Debian Linux jail: Thread 41470
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