Have you tried running cairo-dock with [CMD=]cairo-dock -o[/CMD]?
If this doesn't work either you should make sure compositing is enabled in your xorg.conf.
For nVidia graphics cards there is an article in the FreeBSD manual http://www.freebsd.org/doc/en_US.ISO8859-1/articles/compiz-fusion/xorg-configuration.html.
For other cards it should be similar but I don't know if there are any instructions as I only use nVidia graphics cards.
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