Anaconda Python

R

rraj

Hi

Following web link: https://www.anaconda.com/docs/getting-started/anaconda/install#verify-your-installation-of-conda, to install anaconda. Goal is to get Anaconda Spyder Python IDE installed & working!

First & Second step went successfully. Third step bash ~/Anaconda3-2025.06-0-Linux-x86_64.sh ends in
Code: 
 ERROR: File or directory already exists: '/root/anaconda3'
.
&
[root@localhost ~]# anaconda-navigator
bash: anaconda-navigator: command not found


How to troubleshoot install error?

Thanks
rraj
 
SirDice said:
Unlike Windows, the current working directory is never part of the PATH on UNIX(-like) systems.

And I suggest using sysutils/linux-miniconda-installer instead.
Click to expand...
Hi

linux-miniconda-installer pkg is already there, but when i try to run the installer to install miniconda, i get following output in terminal:
[root@localhost ~]# linux-miniconda-installer
bash: linux-miniconda-installer: command not found.

Where am i going wrong?

How to get miniconda installer running?

PS: Only need anaconda navigator running.

Thanks
rraj
 
a) Don't run it as root. The whole point of miniconda/conda is so you can easily install python modules as a user.
b) it's miniconda-installer.

Code: 
Conda, like pip and CRAN, is a popular system that allows non-root users to
install many binary software packages in their own directories.  The system
includes a base "channel" (repository) as well as 3rd party community
channels, such as "bioconda".  QC for community channels is generally below
that of the base channel and FreeBSD ports, but they provide users with a
convenient way to install software not yet available in FreeBSD ports.

Packages are available for Linux, MacOS, and Windows.  Linux Conda packages
work about as well on FreeBSD as they do on CentOS, which is the basis of
FreeBSD's Linux compatibility tool set.  However, Conda and its packages
require a complete Linux environment for full functionality.

Typical Conda users do not know how to configure this environment on FreeBSD.
Miniconda-installer ensures a proper environment for installing and using
Miniconda and the packages it provides.

Code: 
root@fbsd-test:~ # pkg install linux-miniconda-installer
Updating FreeBSD repository catalogue...
FreeBSD repository is up to date.
Updating FreeBSD-kmods repository catalogue...
FreeBSD-kmods repository is up to date.
All repositories are up to date.
The following 9 package(s) will be affected (of 0 checked):

New packages to be INSTALLED:
        auto-admin: 0.8.3.30 [FreeBSD]
        gettext-runtime: 0.23.1 [FreeBSD]
        indexinfo: 0.3.1_1 [FreeBSD]
        libffi: 3.5.1 [FreeBSD]
        linux-miniconda-installer: 0.1.0.6 [FreeBSD]
        linux_base-rl9: 9.6_1 [FreeBSD]
        mpdecimal: 4.0.1 [FreeBSD]
        python311: 3.11.13_1 [FreeBSD]
        readline: 8.2.13_2 [FreeBSD]

Number of packages to be installed: 9

The process will require 568 MiB more space.
87 MiB to be downloaded.

Proceed with this action? [y/N]: y
[1/9] Fetching indexinfo-0.3.1_1~d24f9eafa1.pkg: 100%    6 KiB   6.2kB/s    00:01
[2/9] Fetching linux_base-rl9-9.6_1~c351c17894.pkg: 100%   59 MiB   3.6MB/s    00:17
[3/9] Fetching mpdecimal-4.0.1~53d00dbe89.pkg: 100%  157 KiB 160.6kB/s    00:01
[4/9] Fetching libffi-3.5.1~edb6e95e51.pkg: 100%   46 KiB  47.3kB/s    00:01
[5/9] Fetching readline-8.2.13_2~2593894849.pkg: 100%  397 KiB 406.6kB/s    00:01
[6/9] Fetching linux-miniconda-installer-0.1.0.6~236bfdbcc9.pkg: 100%    4 KiB   3.9kB/s    00:01
[7/9] Fetching gettext-runtime-0.23.1~cf47233c76.pkg: 100%  230 KiB 235.3kB/s    00:01
[8/9] Fetching auto-admin-0.8.3.30~7a5e86ea0e.pkg: 100%  115 KiB 117.5kB/s    00:01
[9/9] Fetching python311-3.11.13_1~ad3fc36c2b.pkg: 100%   27 MiB   3.5MB/s    00:08
Checking integrity... done (0 conflicting)
[1/9] Installing auto-admin-0.8.3.30...
[1/9] Extracting auto-admin-0.8.3.30: 100%
[2/9] Installing indexinfo-0.3.1_1...
[2/9] Extracting indexinfo-0.3.1_1: 100%
[3/9] Installing gettext-runtime-0.23.1...
[3/9] Extracting gettext-runtime-0.23.1: 100%
[4/9] Installing libffi-3.5.1...
[4/9] Extracting libffi-3.5.1: 100%
[5/9] Installing linux_base-rl9-9.6_1...
[5/9] Extracting linux_base-rl9-9.6_1: 100%
[6/9] Installing mpdecimal-4.0.1...
[6/9] Extracting mpdecimal-4.0.1: 100%
[7/9] Installing readline-8.2.13_2...
[7/9] Extracting readline-8.2.13_2: 100%
[8/9] Installing python311-3.11.13_1...
[8/9] Extracting python311-3.11.13_1: 100%
[9/9] Installing linux-miniconda-installer-0.1.0.6...
[9/9] Extracting linux-miniconda-installer-0.1.0.6: 100%
=====
Message from python311-3.11.13_1:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py311-gdbm       databases/py-gdbm@py311
py311-sqlite3    databases/py-sqlite3@py311
py311-tkinter    x11-toolkits/py-tkinter@py311
root@fbsd-test:~ # sysrc linux_enable="YES"
linux_enable: YES -> YES
root@fbsd-test:~ # service linux start
root@fbsd-test:~ # exit
dice@fbsd-test:~ % miniconda-installer

Usage:      /usr/local/bin/miniconda-installer python-version miniconda-version

Visit https://repo.anaconda.com/miniconda/ for a list of available versions.
Note: python-version must include the '.'.

Example:    /usr/local/bin/miniconda-installer 3.11 25.3.1-1

dice@fbsd-test:~ % miniconda-installer 3.11 25.3.1-1
Miniconda3-py311_25.3.1-1-Linux-x86_64.sh              145 MB   56 MBps    03s

Welcome to Miniconda3 py311_25.3.1-1

In order to continue the installation process, please review the license
agreement.
Please, press ENTER to continue
>>>
MINICONDA END USER LICENSE AGREEMENT

Copyright Notice: Miniconda(R) (C) 2015, Anaconda, Inc.
All rights reserved. Miniconda(R) is licensed, not sold.

<snipped a bunch of installation output>

dice@fbsd-test:~ % conda-shell

Starting Linux bash shell to ensure that Conda packages are fully functional.

Note that uname will return Linux rather than FreeBSD and some other aspects
of the environment will also indicate Linux.

To activate conda, run the "eval" command indicated during the conda
installation, e.g.

eval "$(/home/dice/miniconda3/bin/conda shell.bash hook)"

Type "exit" or "Ctrl+d" to return to your FreeBSD shell.

bash-5.1$ eval "$(/home/dice/miniconda3/bin/conda shell.bash hook)"
(base) bash-5.1$
 
Hi SirDice

Sorry for delay in reply!

Installation of linux-miniconda-installer done!

When trying to install anaconda-navigator following command ends in error given as below:
Code: 
(base) bash-5.1$ conda install --name base anaconda-navigator
Channels:
 - defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: done


==> WARNING: A newer version of conda exists. <==
    current version: 25.3.1
    latest version: 25.11.1

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/rraj/miniconda3

  added / updated specs:
    - anaconda-navigator


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    anaconda-cli-base-0.7.0    |  py311h06a4308_0          52 KB
    anaconda-client-1.13.0     |  py311h06a4308_1         834 KB
    anaconda-cloud-auth-0.7.2  |  py311h06a4308_0          64 KB
    anaconda-navigator-2.6.4   |  py311h06a4308_0         5.2 MB
    aom-3.12.1                 |       h7934f7d_0         2.8 MB
    attrs-25.4.0               |  py311h06a4308_2         174 KB
    backports.tarfile-1.2.0    |  py311h06a4308_0          78 KB
    ca-certificates-2025.12.2  |       h06a4308_0         125 KB
    cairo-1.18.4               |       h44eff21_0         728 KB
    certifi-2025.11.12         |  py311h06a4308_0         153 KB
    chardet-5.2.0              |  py311h06a4308_0         1.9 MB
    click-8.2.1                |  py311h06a4308_1         318 KB
    conda-repo-cli-1.0.173     |  py311h06a4308_0         216 KB
    conda-token-0.5.0          |     pyhd3eb1b0_0          11 KB
    cyrus-sasl-2.1.28          |       h1110e0f_3         242 KB
    dav1d-1.2.1                |       h5eee18b_0         823 KB
    dbus-1.16.2                |       h5bd4931_0         1.2 MB
    defusedxml-0.7.1           |     pyhd3eb1b0_0          23 KB
    expat-2.7.3                |       h3385a95_0         167 KB
    fontconfig-2.15.0          |       h2c49b7f_0         262 KB
    freetype-2.13.3            |       h4a9f257_0         686 KB
    fribidi-1.0.10             |       h7b6447c_0         103 KB
    glib-2.84.2                |       h6a678d5_0         526 KB
    glib-tools-2.84.2          |       h6a678d5_0         119 KB
    graphite2-1.3.14           |       h295c915_1          97 KB
    gst-plugins-base-1.14.1    |       h6a678d5_1         2.2 MB
    gstreamer-1.14.1           |       h5eee18b_1         1.7 MB
    harfbuzz-10.2.0            |       hdfddeaa_1         2.3 MB
    importlib-metadata-8.7.0   |  py311h06a4308_0          69 KB
    jaraco.classes-3.4.0       |  py311h06a4308_0          19 KB
    jaraco.context-6.0.0       |  py311h06a4308_0          17 KB
    jaraco.functools-4.1.0     |  py311h06a4308_0          22 KB
    jeepney-0.7.1              |     pyhd3eb1b0_0          38 KB
    jpeg-9f                    |       h5ce9db8_0         242 KB
    jsonschema-4.25.0          |  py311h06a4308_1         197 KB
    jsonschema-specifications-2025.9.1|  py311h06a4308_0          17 KB
    jupyter_core-5.9.1         |  py311h06a4308_0          96 KB
    keyring-25.7.0             |  py311h06a4308_0          82 KB
    lcms2-2.16                 |       h92b89f2_1         269 KB
    lerc-4.0.0                 |       h6a678d5_0         261 KB
    libabseil-20250127.0       | cxx17_h6a678d5_0         1.3 MB
    libavif-1.1.1              |       h0131e85_1         132 KB
    libclang-14.0.6            |default_hc6dbbc7_2         137 KB
    libclang13-14.0.6          |default_he11475f_2         9.7 MB
    libcups-2.4.2              |       h252cb56_2         4.5 MB
    libdeflate-1.22            |       h5eee18b_0          68 KB
    libevent-2.1.12            |       hdbd6064_1         453 KB
    libgcc-7.2.0               |       h69d50b8_2         269 KB
    libglib-2.84.2             |       h37c7471_0         1.7 MB
    libiconv-1.16              |       h5eee18b_3         759 KB
    libkrb5-1.21.3             |       h520c7b4_4         874 KB
    libllvm14-14.0.6           |       hecde1de_4        33.4 MB
    libopenjpeg-2.5.4          |       hee96239_1         215 KB
    libpng-1.6.50              |       h2ed474d_0         237 KB
    libpq-17.6                 |       ha51bf15_0         2.5 MB
    libprotobuf-5.29.3         |       h3cdef7c_1         3.5 MB
    libsodium-1.0.20           |       heac8642_0         288 KB
    libtiff-4.7.0              |       hde9077f_0         447 KB
    libwebp-base-1.3.2         |       h5eee18b_1         425 KB
    libxcb-1.17.0              |       h9b100fa_0         430 KB
    libxkbcommon-1.9.1         |       h69220b7_0         732 KB
    lmdb-0.9.31                |       hb25bd0a_0         469 KB
    more-itertools-10.8.0      |  py311h06a4308_0         159 KB
    mysql-8.4.0                |       h721767e_2        56.5 MB
    navigator-updater-0.5.1    |  py311h06a4308_0         2.3 MB
    nbformat-5.10.4            |  py311h06a4308_0         161 KB
    nspr-4.37                  |       h8459abe_0         313 KB
    nss-3.89.1                 |       h6a678d5_0         2.1 MB
    openldap-2.6.10            |       he9288cc_1         747 KB
    openssl-3.0.18             |       hd6dcaed_0         4.5 MB
    pillow-12.0.0              |  py311h3b88751_1         935 KB
    pixman-0.46.4              |       h7934f7d_0         1.9 MB
    pkce-1.0.3                 |  py311h06a4308_0           9 KB
    ply-3.11                   |  py311h06a4308_0         111 KB
    psutil-7.0.0               |  py311hee96239_1         547 KB
    pthread-stubs-0.3          |       h0ce48e5_1           5 KB
    pydantic-settings-2.12.0   |  py311h06a4308_0         149 KB
    pyjwt-2.10.1               |  py311h06a4308_1          87 KB
    pyqt-5.15.10               |  py311h6a678d5_1         5.7 MB
    pyqt5-sip-12.13.0          |  py311h5eee18b_1          95 KB
    pyqtwebengine-5.15.10      |  py311h6a678d5_1         170 KB
    python-dateutil-2.9.0post0 |  py311h06a4308_2         323 KB
    python-dotenv-1.1.0        |  py311h06a4308_0          47 KB
    python-fastjsonschema-2.21.2|  py311h06a4308_0         249 KB
    pytz-2025.2                |  py311h06a4308_0         236 KB
    pyyaml-6.0.2               |  py311h5eee18b_0         223 KB
    qt-main-5.15.2             |      hb6262e9_12        53.7 MB
    qt-webengine-5.15.9        |       he2071f7_8        53.7 MB
    qtpy-2.4.3                 |  py311h06a4308_0         130 KB
    readchar-4.2.1             |  py311h06a4308_0          19 KB
    referencing-0.37.0         |  py311h06a4308_0          82 KB
    requests-toolbelt-1.0.0    |  py311h06a4308_0          90 KB
    rpds-py-0.28.0             |  py311h498d7c9_0         338 KB
    secretstorage-3.4.0        |  py311h3e8c6aa_0          30 KB
    semver-3.0.4               |  py311h06a4308_0          44 KB
    shellingham-1.5.4          |  py311h06a4308_0          23 KB
    sip-6.7.12                 |  py311h6a678d5_1         607 KB
    six-1.17.0                 |  py311h06a4308_0          37 KB
    tabulate-0.9.0             |  py311h06a4308_0          70 KB
    tomli-2.2.1                |  py311h06a4308_0          35 KB
    traitlets-5.14.3           |  py311h06a4308_0         225 KB
    typer-0.20.0               |  py311h06a4308_0         156 KB
    typer-slim-0.20.0          |  py311h06a4308_0         112 KB
    typer-slim-standard-0.20.0 |  py311h06a4308_0           7 KB
    typing-inspection-0.4.2    |  py311h06a4308_0          31 KB
    ujson-5.10.0               |  py311h6a678d5_1         141 KB
    xkeyboard-config-2.44      |       h5eee18b_0         411 KB
    xorg-libx11-1.8.12         |       h9b100fa_1         895 KB
    xorg-libxau-1.0.12         |       h9b100fa_0          13 KB
    xorg-libxdmcp-1.1.5        |       h9b100fa_0          19 KB
    xorg-libxext-1.3.6         |       h9b100fa_0          49 KB
    xorg-libxrender-0.9.12     |       h9b100fa_0          31 KB
    xorg-xorgproto-2024.1      |       h5eee18b_1         580 KB
    yaml-0.2.5                 |       h7b6447c_0          75 KB
    zipp-3.23.0                |  py311h06a4308_0          31 KB
    ------------------------------------------------------------
                                           Total:       275.6 MB

The following NEW packages will be INSTALLED:

  anaconda-cli-base  pkgs/main/linux-64::anaconda-cli-base-0.7.0-py311h06a4308_0
  anaconda-client    pkgs/main/linux-64::anaconda-client-1.13.0-py311h06a4308_1
  anaconda-cloud-au~ pkgs/main/linux-64::anaconda-cloud-auth-0.7.2-py311h06a4308_0
  anaconda-navigator pkgs/main/linux-64::anaconda-navigator-2.6.4-py311h06a4308_0
  aom                pkgs/main/linux-64::aom-3.12.1-h7934f7d_0
  attrs              pkgs/main/linux-64::attrs-25.4.0-py311h06a4308_2
  backports.tarfile  pkgs/main/linux-64::backports.tarfile-1.2.0-py311h06a4308_0
  cairo              pkgs/main/linux-64::cairo-1.18.4-h44eff21_0
  chardet            pkgs/main/linux-64::chardet-5.2.0-py311h06a4308_0
  click              pkgs/main/linux-64::click-8.2.1-py311h06a4308_1
  conda-repo-cli     pkgs/main/linux-64::conda-repo-cli-1.0.173-py311h06a4308_0
  conda-token        pkgs/main/noarch::conda-token-0.5.0-pyhd3eb1b0_0
  cyrus-sasl         pkgs/main/linux-64::cyrus-sasl-2.1.28-h1110e0f_3
  dav1d              pkgs/main/linux-64::dav1d-1.2.1-h5eee18b_0
  dbus               pkgs/main/linux-64::dbus-1.16.2-h5bd4931_0
  defusedxml         pkgs/main/noarch::defusedxml-0.7.1-pyhd3eb1b0_0
  expat              pkgs/main/linux-64::expat-2.7.3-h3385a95_0
  fontconfig         pkgs/main/linux-64::fontconfig-2.15.0-h2c49b7f_0
  freetype           pkgs/main/linux-64::freetype-2.13.3-h4a9f257_0
  fribidi            pkgs/main/linux-64::fribidi-1.0.10-h7b6447c_0
  glib               pkgs/main/linux-64::glib-2.84.2-h6a678d5_0
  glib-tools         pkgs/main/linux-64::glib-tools-2.84.2-h6a678d5_0
  graphite2          pkgs/main/linux-64::graphite2-1.3.14-h295c915_1
  gst-plugins-base   pkgs/main/linux-64::gst-plugins-base-1.14.1-h6a678d5_1
  gstreamer          pkgs/main/linux-64::gstreamer-1.14.1-h5eee18b_1
  harfbuzz           pkgs/main/linux-64::harfbuzz-10.2.0-hdfddeaa_1
  importlib-metadata pkgs/main/linux-64::importlib-metadata-8.7.0-py311h06a4308_0
  jaraco.classes     pkgs/main/linux-64::jaraco.classes-3.4.0-py311h06a4308_0
  jaraco.context     pkgs/main/linux-64::jaraco.context-6.0.0-py311h06a4308_0
  jaraco.functools   pkgs/main/linux-64::jaraco.functools-4.1.0-py311h06a4308_0
  jeepney            pkgs/main/noarch::jeepney-0.7.1-pyhd3eb1b0_0
  jpeg               pkgs/main/linux-64::jpeg-9f-h5ce9db8_0
  jsonschema         pkgs/main/linux-64::jsonschema-4.25.0-py311h06a4308_1
  jsonschema-specif~ pkgs/main/linux-64::jsonschema-specifications-2025.9.1-py311h06a4308_0
  jupyter_core       pkgs/main/linux-64::jupyter_core-5.9.1-py311h06a4308_0
  keyring            pkgs/main/linux-64::keyring-25.7.0-py311h06a4308_0
  lcms2              pkgs/main/linux-64::lcms2-2.16-h92b89f2_1
  lerc               pkgs/main/linux-64::lerc-4.0.0-h6a678d5_0
  libabseil          pkgs/main/linux-64::libabseil-20250127.0-cxx17_h6a678d5_0
  libavif            pkgs/main/linux-64::libavif-1.1.1-h0131e85_1
  libclang           pkgs/main/linux-64::libclang-14.0.6-default_hc6dbbc7_2
  libclang13         pkgs/main/linux-64::libclang13-14.0.6-default_he11475f_2
  libcups            pkgs/main/linux-64::libcups-2.4.2-h252cb56_2
  libdeflate         pkgs/main/linux-64::libdeflate-1.22-h5eee18b_0
  libevent           pkgs/main/linux-64::libevent-2.1.12-hdbd6064_1
  libgcc             pkgs/main/linux-64::libgcc-7.2.0-h69d50b8_2
  libglib            pkgs/main/linux-64::libglib-2.84.2-h37c7471_0
  libiconv           pkgs/main/linux-64::libiconv-1.16-h5eee18b_3
  libkrb5            pkgs/main/linux-64::libkrb5-1.21.3-h520c7b4_4
  libllvm14          pkgs/main/linux-64::libllvm14-14.0.6-hecde1de_4
  libopenjpeg        pkgs/main/linux-64::libopenjpeg-2.5.4-hee96239_1
  libpng             pkgs/main/linux-64::libpng-1.6.50-h2ed474d_0
  libpq              pkgs/main/linux-64::libpq-17.6-ha51bf15_0
  libprotobuf        pkgs/main/linux-64::libprotobuf-5.29.3-h3cdef7c_1
  libsodium          pkgs/main/linux-64::libsodium-1.0.20-heac8642_0
  libtiff            pkgs/main/linux-64::libtiff-4.7.0-hde9077f_0
  libwebp-base       pkgs/main/linux-64::libwebp-base-1.3.2-h5eee18b_1
  libxcb             pkgs/main/linux-64::libxcb-1.17.0-h9b100fa_0
  libxkbcommon       pkgs/main/linux-64::libxkbcommon-1.9.1-h69220b7_0
  lmdb               pkgs/main/linux-64::lmdb-0.9.31-hb25bd0a_0
  more-itertools     pkgs/main/linux-64::more-itertools-10.8.0-py311h06a4308_0
  mysql              pkgs/main/linux-64::mysql-8.4.0-h721767e_2
  navigator-updater  pkgs/main/linux-64::navigator-updater-0.5.1-py311h06a4308_0
  nbformat           pkgs/main/linux-64::nbformat-5.10.4-py311h06a4308_0
  nspr               pkgs/main/linux-64::nspr-4.37-h8459abe_0
  nss                pkgs/main/linux-64::nss-3.89.1-h6a678d5_0
  openldap           pkgs/main/linux-64::openldap-2.6.10-he9288cc_1
  pillow             pkgs/main/linux-64::pillow-12.0.0-py311h3b88751_1
  pixman             pkgs/main/linux-64::pixman-0.46.4-h7934f7d_0
  pkce               pkgs/main/linux-64::pkce-1.0.3-py311h06a4308_0
  ply                pkgs/main/linux-64::ply-3.11-py311h06a4308_0
  psutil             pkgs/main/linux-64::psutil-7.0.0-py311hee96239_1
  pthread-stubs      pkgs/main/linux-64::pthread-stubs-0.3-h0ce48e5_1
  pydantic-settings  pkgs/main/linux-64::pydantic-settings-2.12.0-py311h06a4308_0
  pyjwt              pkgs/main/linux-64::pyjwt-2.10.1-py311h06a4308_1
  pyqt               pkgs/main/linux-64::pyqt-5.15.10-py311h6a678d5_1
  pyqt5-sip          pkgs/main/linux-64::pyqt5-sip-12.13.0-py311h5eee18b_1
  pyqtwebengine      pkgs/main/linux-64::pyqtwebengine-5.15.10-py311h6a678d5_1
  python-dateutil    pkgs/main/linux-64::python-dateutil-2.9.0post0-py311h06a4308_2
  python-dotenv      pkgs/main/linux-64::python-dotenv-1.1.0-py311h06a4308_0
  python-fastjsonsc~ pkgs/main/linux-64::python-fastjsonschema-2.21.2-py311h06a4308_0
  pytz               pkgs/main/linux-64::pytz-2025.2-py311h06a4308_0
  pyyaml             pkgs/main/linux-64::pyyaml-6.0.2-py311h5eee18b_0
  qt-main            pkgs/main/linux-64::qt-main-5.15.2-hb6262e9_12
  qt-webengine       pkgs/main/linux-64::qt-webengine-5.15.9-he2071f7_8
  qtpy               pkgs/main/linux-64::qtpy-2.4.3-py311h06a4308_0
  readchar           pkgs/main/linux-64::readchar-4.2.1-py311h06a4308_0
  referencing        pkgs/main/linux-64::referencing-0.37.0-py311h06a4308_0
  requests-toolbelt  pkgs/main/linux-64::requests-toolbelt-1.0.0-py311h06a4308_0
  rpds-py            pkgs/main/linux-64::rpds-py-0.28.0-py311h498d7c9_0
  secretstorage      pkgs/main/linux-64::secretstorage-3.4.0-py311h3e8c6aa_0
  semver             pkgs/main/linux-64::semver-3.0.4-py311h06a4308_0
  shellingham        pkgs/main/linux-64::shellingham-1.5.4-py311h06a4308_0
  sip                pkgs/main/linux-64::sip-6.7.12-py311h6a678d5_1
  six                pkgs/main/linux-64::six-1.17.0-py311h06a4308_0
  tabulate           pkgs/main/linux-64::tabulate-0.9.0-py311h06a4308_0
  tomli              pkgs/main/linux-64::tomli-2.2.1-py311h06a4308_0
  traitlets          pkgs/main/linux-64::traitlets-5.14.3-py311h06a4308_0
  typer              pkgs/main/linux-64::typer-0.20.0-py311h06a4308_0
  typer-slim         pkgs/main/linux-64::typer-slim-0.20.0-py311h06a4308_0
  typer-slim-standa~ pkgs/main/linux-64::typer-slim-standard-0.20.0-py311h06a4308_0
  typing-inspection  pkgs/main/linux-64::typing-inspection-0.4.2-py311h06a4308_0
  ujson              pkgs/main/linux-64::ujson-5.10.0-py311h6a678d5_1
  xkeyboard-config   pkgs/main/linux-64::xkeyboard-config-2.44-h5eee18b_0
  xorg-libx11        pkgs/main/linux-64::xorg-libx11-1.8.12-h9b100fa_1
  xorg-libxau        pkgs/main/linux-64::xorg-libxau-1.0.12-h9b100fa_0
  xorg-libxdmcp      pkgs/main/linux-64::xorg-libxdmcp-1.1.5-h9b100fa_0
  xorg-libxext       pkgs/main/linux-64::xorg-libxext-1.3.6-h9b100fa_0
  xorg-libxrender    pkgs/main/linux-64::xorg-libxrender-0.9.12-h9b100fa_0
  xorg-xorgproto     pkgs/main/linux-64::xorg-xorgproto-2024.1-h5eee18b_1
  yaml               pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
  zipp               pkgs/main/linux-64::zipp-3.23.0-py311h06a4308_0

The following packages will be UPDATED:

  ca-certificates                      2025.2.25-h06a4308_0 --> 2025.12.2-h06a4308_0
  certifi                         2025.4.26-py311h06a4308_0 --> 2025.11.12-py311h06a4308_0
  openssl                                 3.0.16-h5eee18b_0 --> 3.0.18-hd6dcaed_0


Proceed ([y]/n)? y


Downloading and Extracting Packages:
                                                                       
                                                                       
CondaHTTPError: HTTP 000 CONNECTION FAILED for url <https://repo.anaconda.com/pkgs/main/linux-64/qt-webengine-5.15.9-he2071f7_8.conda>                 
Elapsed: -                                                             
                                                                       
An HTTP error occurred when trying to retrieve this URL.               
HTTP errors are often intermittent, and a simple retry will get you on your way.
                                                                       
CondaHTTPError: HTTP 000 CONNECTION FAILED for url <https://repo.anaconda.com/pkgs/main/linux-64/qt-webengine-5.15.9-he2071f7_8.conda>                 
Elapsed: -                                                             
                                                                       
An HTTP error occurred when trying to retrieve this URL.               
HTTP errors are often intermittent, and a simple retry will get you on your way.

Even updating conda
$ conda update -n base -c defaults conda did not work!

But i get anaconda-navigator after several install attempts using:
conda install --name base anaconda-navigator.

Now when i run anaconda-navigator i get following error!

Code: 
(base) bash-5.1$
(base) bash-5.1$ anaconda-navigator
Traceback (most recent call last):
  File "/home/rraj/miniconda3/bin/anaconda-navigator", line 7, in <module>
    from anaconda_navigator.app.main import main
  File "/home/rraj/miniconda3/lib/python3.11/site-packages/anaconda_navigator/app/main.py", line 19, in <module>
    from anaconda_navigator.app.start import start_app
  File "/home/rraj/miniconda3/lib/python3.11/site-packages/anaconda_navigator/app/start.py", line 32, in <module>
    from anaconda_navigator.widgets.main_window import MainWindow
  File "/home/rraj/miniconda3/lib/python3.11/site-packages/anaconda_navigator/widgets/main_window/__init__.py", line 59, in <module>
    from anaconda_navigator.widgets.web.survey import SurveyDialog
  File "/home/rraj/miniconda3/lib/python3.11/site-packages/anaconda_navigator/widgets/web/survey.py", line 17, in <module>
    from qtpy.QtWebEngineWidgets import QWebEngineView, QWebEnginePage, QWebEngineSettings
  File "/home/rraj/miniconda3/lib/python3.11/site-packages/qtpy/QtWebEngineWidgets.py", line 28, in <module>
    from PyQt5.QtWebEngineWidgets import (
ImportError: libpci.so.3: cannot open shared object file: No such file or directory


What else is required?

Thanks
rraj
 
Last edited:
SirDice said:
a) Don't run it as root. The whole point of miniconda/conda is so you can easily install python modules as a user.
b) it's miniconda-installer.

Code: 
Conda, like pip and CRAN, is a popular system that allows non-root users to
install many binary software packages in their own directories.  The system
includes a base "channel" (repository) as well as 3rd party community
channels, such as "bioconda".  QC for community channels is generally below
that of the base channel and FreeBSD ports, but they provide users with a
convenient way to install software not yet available in FreeBSD ports.

Packages are available for Linux, MacOS, and Windows.  Linux Conda packages
work about as well on FreeBSD as they do on CentOS, which is the basis of
FreeBSD's Linux compatibility tool set.  However, Conda and its packages
require a complete Linux environment for full functionality.

Typical Conda users do not know how to configure this environment on FreeBSD.
Miniconda-installer ensures a proper environment for installing and using
Miniconda and the packages it provides.

Code: 
root@fbsd-test:~ # pkg install linux-miniconda-installer
Updating FreeBSD repository catalogue...
FreeBSD repository is up to date.
Updating FreeBSD-kmods repository catalogue...
FreeBSD-kmods repository is up to date.
All repositories are up to date.
The following 9 package(s) will be affected (of 0 checked):

New packages to be INSTALLED:
        auto-admin: 0.8.3.30 [FreeBSD]
        gettext-runtime: 0.23.1 [FreeBSD]
        indexinfo: 0.3.1_1 [FreeBSD]
        libffi: 3.5.1 [FreeBSD]
        linux-miniconda-installer: 0.1.0.6 [FreeBSD]
        linux_base-rl9: 9.6_1 [FreeBSD]
        mpdecimal: 4.0.1 [FreeBSD]
        python311: 3.11.13_1 [FreeBSD]
        readline: 8.2.13_2 [FreeBSD]

Number of packages to be installed: 9

The process will require 568 MiB more space.
87 MiB to be downloaded.

Proceed with this action? [y/N]: y
[1/9] Fetching indexinfo-0.3.1_1~d24f9eafa1.pkg: 100%    6 KiB   6.2kB/s    00:01
[2/9] Fetching linux_base-rl9-9.6_1~c351c17894.pkg: 100%   59 MiB   3.6MB/s    00:17
[3/9] Fetching mpdecimal-4.0.1~53d00dbe89.pkg: 100%  157 KiB 160.6kB/s    00:01
[4/9] Fetching libffi-3.5.1~edb6e95e51.pkg: 100%   46 KiB  47.3kB/s    00:01
[5/9] Fetching readline-8.2.13_2~2593894849.pkg: 100%  397 KiB 406.6kB/s    00:01
[6/9] Fetching linux-miniconda-installer-0.1.0.6~236bfdbcc9.pkg: 100%    4 KiB   3.9kB/s    00:01
[7/9] Fetching gettext-runtime-0.23.1~cf47233c76.pkg: 100%  230 KiB 235.3kB/s    00:01
[8/9] Fetching auto-admin-0.8.3.30~7a5e86ea0e.pkg: 100%  115 KiB 117.5kB/s    00:01
[9/9] Fetching python311-3.11.13_1~ad3fc36c2b.pkg: 100%   27 MiB   3.5MB/s    00:08
Checking integrity... done (0 conflicting)
[1/9] Installing auto-admin-0.8.3.30...
[1/9] Extracting auto-admin-0.8.3.30: 100%
[2/9] Installing indexinfo-0.3.1_1...
[2/9] Extracting indexinfo-0.3.1_1: 100%
[3/9] Installing gettext-runtime-0.23.1...
[3/9] Extracting gettext-runtime-0.23.1: 100%
[4/9] Installing libffi-3.5.1...
[4/9] Extracting libffi-3.5.1: 100%
[5/9] Installing linux_base-rl9-9.6_1...
[5/9] Extracting linux_base-rl9-9.6_1: 100%
[6/9] Installing mpdecimal-4.0.1...
[6/9] Extracting mpdecimal-4.0.1: 100%
[7/9] Installing readline-8.2.13_2...
[7/9] Extracting readline-8.2.13_2: 100%
[8/9] Installing python311-3.11.13_1...
[8/9] Extracting python311-3.11.13_1: 100%
[9/9] Installing linux-miniconda-installer-0.1.0.6...
[9/9] Extracting linux-miniconda-installer-0.1.0.6: 100%
=====
Message from python311-3.11.13_1:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py311-gdbm       databases/py-gdbm@py311
py311-sqlite3    databases/py-sqlite3@py311
py311-tkinter    x11-toolkits/py-tkinter@py311
root@fbsd-test:~ # sysrc linux_enable="YES"
linux_enable: YES -> YES
root@fbsd-test:~ # service linux start
root@fbsd-test:~ # exit
dice@fbsd-test:~ % miniconda-installer

Usage:      /usr/local/bin/miniconda-installer python-version miniconda-version

Visit https://repo.anaconda.com/miniconda/ for a list of available versions.
Note: python-version must include the '.'.

Example:    /usr/local/bin/miniconda-installer 3.11 25.3.1-1

dice@fbsd-test:~ % miniconda-installer 3.11 25.3.1-1
Miniconda3-py311_25.3.1-1-Linux-x86_64.sh              145 MB   56 MBps    03s

Welcome to Miniconda3 py311_25.3.1-1

In order to continue the installation process, please review the license
agreement.
Please, press ENTER to continue
>>>
MINICONDA END USER LICENSE AGREEMENT

Copyright Notice: Miniconda(R) (C) 2015, Anaconda, Inc.
All rights reserved. Miniconda(R) is licensed, not sold.

<snipped a bunch of installation output>https://forums.freebsd.org/lost-password/ad5du.42803/confirm?c=DN5EdQCLwN6QNxmN

dice@fbsd-test:~ % conda-shell

Starting Linux bash shell to ensure that Conda packages are fully functional.

Note that uname will return Linux rather than FreeBSD and some other aspects
of the environment will also indicate Linux.

To activate conda, run the "eval" command indicated during the conda
installation, e.g.

eval "$(/home/dice/miniconda3/bin/conda shell.bash hook)"

Type "exit" or "Ctrl+d" to return to your FreeBSD shell.

bash-5.1$ eval "$(/home/dice/miniconda3/bin/conda shell.bash hook)"
(base) bash-5.1$
Click to expand...
When I try to run the miniconda-installer I get:
SirDice said:
a) Don't run it as root. The whole point of miniconda/conda is so you can easily install python modules as a user.
b) it's miniconda-installer.

Code: 
Conda, like pip and CRAN, is a popular system that allows non-root users to
install many binary software packages in their own directories.  The system
includes a base "channel" (repository) as well as 3rd party community
channels, such as "bioconda".  QC for community channels is generally below
that of the base channel and FreeBSD ports, but they provide users with a
convenient way to install software not yet available in FreeBSD ports.

Packages are available for Linux, MacOS, and Windows.  Linux Conda packages
work about as well on FreeBSD as they do on CentOS, which is the basis of
FreeBSD's Linux compatibility tool set.  However, Conda and its packages
require a complete Linux environment for full functionality.

Typical Conda users do not know how to configure this environment on FreeBSD.
Miniconda-installer ensures a proper environment for installing and using
Miniconda and the packages it provides.

Code: 
root@fbsd-test:~ # pkg install linux-miniconda-installer
Updating FreeBSD repository catalogue...
FreeBSD repository is up to date.
Updating FreeBSD-kmods repository catalogue...
FreeBSD-kmods repository is up to date.
All repositories are up to date.
The following 9 package(s) will be affected (of 0 checked):

New packages to be INSTALLED:
        auto-admin: 0.8.3.30 [FreeBSD]
        gettext-runtime: 0.23.1 [FreeBSD]
        indexinfo: 0.3.1_1 [FreeBSD]
        libffi: 3.5.1 [FreeBSD]
        linux-miniconda-installer: 0.1.0.6 [FreeBSD]
        linux_base-rl9: 9.6_1 [FreeBSD]
        mpdecimal: 4.0.1 [FreeBSD]
        python311: 3.11.13_1 [FreeBSD]
        readline: 8.2.13_2 [FreeBSD]

Number of packages to be installed: 9

The process will require 568 MiB more space.
87 MiB to be downloaded.

Proceed with this action? [y/N]: y
[1/9] Fetching indexinfo-0.3.1_1~d24f9eafa1.pkg: 100%    6 KiB   6.2kB/s    00:01
[2/9] Fetching linux_base-rl9-9.6_1~c351c17894.pkg: 100%   59 MiB   3.6MB/s    00:17
[3/9] Fetching mpdecimal-4.0.1~53d00dbe89.pkg: 100%  157 KiB 160.6kB/s    00:01
[4/9] Fetching libffi-3.5.1~edb6e95e51.pkg: 100%   46 KiB  47.3kB/s    00:01
[5/9] Fetching readline-8.2.13_2~2593894849.pkg: 100%  397 KiB 406.6kB/s    00:01
[6/9] Fetching linux-miniconda-installer-0.1.0.6~236bfdbcc9.pkg: 100%    4 KiB   3.9kB/s    00:01
[7/9] Fetching gettext-runtime-0.23.1~cf47233c76.pkg: 100%  230 KiB 235.3kB/s    00:01
[8/9] Fetching auto-admin-0.8.3.30~7a5e86ea0e.pkg: 100%  115 KiB 117.5kB/s    00:01
[9/9] Fetching python311-3.11.13_1~ad3fc36c2b.pkg: 100%   27 MiB   3.5MB/s    00:08
Checking integrity... done (0 conflicting)
[1/9] Installing auto-admin-0.8.3.30...
[1/9] Extracting auto-admin-0.8.3.30: 100%
[2/9] Installing indexinfo-0.3.1_1...
[2/9] Extracting indexinfo-0.3.1_1: 100%
[3/9] Installing gettext-runtime-0.23.1...
[3/9] Extracting gettext-runtime-0.23.1: 100%
[4/9] Installing libffi-3.5.1...
[4/9] Extracting libffi-3.5.1: 100%
[5/9] Installing linux_base-rl9-9.6_1...
[5/9] Extracting linux_base-rl9-9.6_1: 100%
[6/9] Installing mpdecimal-4.0.1...
[6/9] Extracting mpdecimal-4.0.1: 100%
[7/9] Installing readline-8.2.13_2...
[7/9] Extracting readline-8.2.13_2: 100%
[8/9] Installing python311-3.11.13_1...
[8/9] Extracting python311-3.11.13_1: 100%
[9/9] Installing linux-miniconda-installer-0.1.0.6...
[9/9] Extracting linux-miniconda-installer-0.1.0.6: 100%
=====
Message from python311-3.11.13_1:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py311-gdbm       databases/py-gdbm@py311
py311-sqlite3    databases/py-sqlite3@py311
py311-tkinter    x11-toolkits/py-tkinter@py311
root@fbsd-test:~ # sysrc linux_enable="YES"
linux_enable: YES -> YES
root@fbsd-test:~ # service linux start
root@fbsd-test:~ # exit
dice@fbsd-test:~ % miniconda-installer

Usage:      /usr/local/bin/miniconda-installer python-version miniconda-version

Visit https://repo.anaconda.com/miniconda/ for a list of available versions.
Note: python-version must include the '.'.

Example:    /usr/local/bin/miniconda-installer 3.11 25.3.1-1

dice@fbsd-test:~ % miniconda-installer 3.11 25.3.1-1
Miniconda3-py311_25.3.1-1-Linux-x86_64.sh              145 MB   56 MBps    03s

Welcome to Miniconda3 py311_25.3.1-1

In order to continue the installation process, please review the license
agreement.
Please, press ENTER to continue
>>>
MINICONDA END USER LICENSE AGREEMENT

Copyright Notice: Miniconda(R) (C) 2015, Anaconda, Inc.
All rights reserved. Miniconda(R) is licensed, not sold.

<snipped a bunch of installation output>

dice@fbsd-test:~ % conda-shell

Starting Linux bash shell to ensure that Conda packages are fully functional.

Note that uname will return Linux rather than FreeBSD and some other aspects
of the environment will also indicate Linux.

To activate conda, run the "eval" command indicated during the conda
installation, e.g.

eval "$(/home/dice/miniconda3/bin/conda shell.bash hook)"

Type "exit" or "Ctrl+d" to return to your FreeBSD shell.

bash-5.1$ eval "$(/home/dice/miniconda3/bin/conda shell.bash hook)"
(base) bash-5.1$
Click to expand...
When I try to run the miniconda-installer I get:
Code: 
rick@FreeBSD-vm:~ $ miniconda-installer 3.11 25.3.1-1
/compat/linux/bin/sh: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.33' not found (required by /compat/linux/bin/sh)
/compat/linux/bin/sh: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by /compat/linux/bin/sh)
rick@FreeBSD-vm:~ $
 
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