In case it was not clear from the first 2 replies.. Rsync, alone, does not do incremental backups. You could use it along with your own set of scrypts, but it is easier to just use a program that was designed from the get go to support incremental backups.
Can it handle big uploaded files? I'm having concerns about the subfolder that holds references to older versions of the files. That looks like an SCM such as git or hg, and they are definitely not designed to track big files.
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