Probably path related. Unbound is also a part of the base system and the base directories such as /usr/bin come before directories like /usr/local/bin in the searchpath.
So if you start a command without specifying a path then the search path will determine which gets started. In this case /usr/sbin/unbound instead of /usr/local/sbin/unbound.
PS: a quicker way to check the version of an installed package is: pkg info -x unbound. That will be a lot quicker than having to wait for portmaster -L.
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