PHP Upgrade Issues

Hi All,

well i have just spent a few hours trying to get my php to work, and i am at a dead end. i am not sure whats going on.

I have executed an upgrade to apache22 today, however my php seems to be now broken.

When i comment out the line
Code:
LoadModule php5_module        libexec/apache22/libphp5.so
i can start apache22 now. When i load that module i get this in the error messages:

Code:
Sep 24 18:02:16 server-01 pid 78315 (httpd), uid 0: exited on signal 11 (core dumped)
Sep 24 18:02:19 server-01 pid 78325 (httpd), uid 0: exited on signal 11 (core dumped)

Here is a list of the packages i have installed:
Code:
[root@server-01 /usr/ports/lang/php5]# pkg_info
OpenSP-1.5.2_2      This package is a collection of SGML/XML tools called OpenS
WWWdb-0.8.3         A Perl based generic WWW DB interface / frontend
adminer-2.3.2       A full-featured MySQL management tool written in PHP
adobe-cmaps-20051217_1 Adobe CMap collection
adodb-5.11          Database library for PHP
amspsfnt-1.0_5      AMSFonts PostScript Fonts (Adobe Type 1 format)
apache-2.2.16_1     Version 2.2.x of Apache web server with prefork MPM.
apr-ipv6-devrandom-gdbm-db42-1.4.2.1.3.9_2 Apache Portability Library
aspell-0.60.6_3     Spelling checker with better suggestion logic than ispell
autoconf-2.67       Automatically configure source code on many Un*x platforms 
autoconf-wrapper-20071109 Wrapper script for GNU autoconf
automake-1.10.3     GNU Standards-compliant Makefile generator (1.10)
automake-1.9.6_4    GNU Standards-compliant Makefile generator (1.9)
automake-wrapper-20071109 Wrapper script for GNU automake
gamin-0.1.10_4      A file and directory monitoring system
gd-2.0.35_7,1       A graphics library for fast creation of images
gdbm-1.8.3_3        The GNU database manager
gettext-0.18.1.1    GNU gettext package
ghostscript8-8.71_6 Ghostscript 8.x PostScript interpreter
gio-fam-backend-2.24.2 FAM backend for GLib's GIO library
glib-2.24.2         Some useful routines of C programming (current stable versi
glitz-0.5.6_2       OpenGL image compositing library
glproto-1.4.11      GLX extension headers
gmake-3.81_4        GNU version of 'make' utility
gmp-5.0.1           A free library for arbitrary precision arithmetic
gnutls-2.8.6_2      GNU Transport Layer Security library
gobject-introspection-0.6.14 Generate interface introspection data for GObject libraries
gpac-libgpac-0.4.5_4,1 Gpac MPEG-4 Systems library and headers
gperf-3.0.3         Generates perfect hash functions for sets of keywords
gsfonts-8.11_5      Standard Fonts for Ghostscript
help2man-1.38.2_1   Automatically generating simple manual pages from program o
html-4.01_2         All W3C published SGML DTDs for HTML
html2text-1.3.2a    Converts HTML documents into plain text
imlib2-1.4.1.000_9,2 The next generation graphics library for Enlightenment
inputproto-2.0      Input extension headers
intltool-0.40.6     Tools to internationalize various kinds of data files
iso8879-1986_2      Character entity sets from ISO 8879:1986 (SGML)
jadetex-3.13_6      A TeX backend for Jade, for typesetting SGML documents
jasper-1.900.1_9    An implementation of the codec specified in the JPEG-2000 s
jbig2dec-0.11       Decoder implementation of the JBIG2 image compression forma
jbigkit-1.6         Lossless compression for bi-level images such as scanned pa
jpeg-8_3            IJG's jpeg compression utilities
kbproto-1.0.4       KB extension headers
lame-3.98.4         Fast MP3 encoder kit
latex-cjk-4.8.2_4   A LaTeX2e macro package which enables the use of CJK script
lzo2-2.03_2         Portable speedy, lossless data compression library
m4-1.4.15,1         GNU m4
makedepend-1.0.2,1  A dependency generator for makefiles
mkfontdir-1.0.5     Create an index of X font files in a directory
mkfontscale-1.0.7   Creates an index of scalable font files for X
mpfr-3.0.0          A library for multiple-precision floating-point computation
mysql-client-5.1.50_1 Multithreaded SQL database (client)
mysql-server-5.1.50 Multithreaded SQL database (server)
nano-2.2.5          Nano's ANOther editor, an enhanced free Pico clone
nasm-2.08.02,1      General-purpose multi-platform x86 and amd64 assembler
net-snmp-5.5_4      An extendable SNMP implementation
netpbm-10.26.64_4   A toolkit for conversion of images between different format
nmap-5.35.d1        Port scanning utility for large networks
nspr-4.8.6          A platform-neutral API for system level and libc like funct
open-motif-2.2.3_6  Motif X11 Toolkit (industry standard GUI (IEEE 1295))
openjade-1.3.3p1_1  Object-oriented SGML/XML parser toolkit and DSSSL engine
openldap-client-2.4.23 Open source LDAP client implementation
openvpn-2.1.3       Secure IP/Ethernet tunnel daemon
orc-0.4.9           Library and toolset to operate arrays of data
p5-Authen-PAM-0.16_1 A Perl interface to the PAM library
p5-Net-SSLeay-1.36  Perl5 interface to SSL
p5-Tk-804.028.502_1 A re-port of a perl5 interface to Tk8.4
p5-XML-Parser-2.36_1 Perl extension interface to James Clark's XML parser, expat
p5-gettext-1.05_3   Message handling functions
p5-type1inst-0.6.1_5 A script that helps install Postscript fonts in X Window Sy
pango-1.28.1        An open-source framework for the layout and rendering of i1
pcre-8.10           Perl Compatible Regular Expressions library
pdflib-7.0.4        A C library for dynamically generating PDF
pecl-fileinfo-1.0.4 A PECL extension to retrieve info about files
pecl-pdflib-2.1.8   A PECL extension to create PDF on the fly
peps-2.0_4          Converts EPS images to anti-aliased bitmaps
perl-5.10.1_2       Practical Extraction and Report Language
php5-5.3.3_2        PHP Scripting Language
php5-bz2-5.3.3_2    The bz2 shared extension for php
php5-ctype-5.3.3_2  The ctype shared extension for php
php5-dom-5.3.3_2    The dom shared extension for php
php5-exif-5.3.3_2   The exif shared extension for php
php5-extensions-1.4 A "meta-port" to install PHP extensions
php5-filter-5.3.3_2 The filter shared extension for php
php5-ftp-5.3.3_2    The ftp shared extension for php
php5-gd-5.3.3_2     The gd shared extension for php
php5-hash-5.3.3_2   The hash shared extension for php
php5-iconv-5.3.3_2  The iconv shared extension for php
php5-imap-5.3.3_2   The imap shared extension for php
php5-json-5.3.3_2   The json shared extension for php
php5-ldap-5.3.3_2   The ldap shared extension for php
php5-mcrypt-5.3.3_2 The mcrypt shared extension for php
php5-mysql-5.3.3_2  The mysql shared extension for php
php5-openssl-5.3.3_2 The openssl shared extension for php
php5-pdo-5.3.3_2    The pdo shared extension for php
php5-pdo_sqlite-5.3.3_2 The pdo_sqlite shared extension for php
php5-posix-5.3.3_2  The posix shared extension for php
php5-pspell-5.3.3_2 The pspell shared extension for php
php5-recode-5.3.3_2 The recode shared extension for php
php5-session-5.3.3_2 The session shared extension for php
php5-simplexml-5.3.3_2 The simplexml shared extension for php
php5-snmp-5.3.3_2   The snmp shared extension for php
php5-soap-5.3.3_2   The soap shared extension for php
php5-sockets-5.3.3_2 The sockets shared extension for php
php5-sqlite-5.3.3_2 The sqlite shared extension for php
php5-tokenizer-5.3.3_2 The tokenizer shared extension for php
php5-xml-5.3.3_2    The xml shared extension for php
php5-xmlreader-5.3.3_2 The xmlreader shared extension for php
php5-xmlwriter-5.3.3_2 The xmlwriter shared extension for php
php5-zip-5.3.3_2    The zip shared extension for php
php5-zlib-5.3.3_2   The zlib shared extension for php
pixman-0.16.6       Low-level pixel manipulation library
pkg-config-0.25_1   A utility to retrieve information about installed libraries
pkg_cutleaves-20090810 Interactive script for deinstalling 'leaf' packages
pkg_tree-1.1_2      Get a 'graphical' tree-overview of installed packages
png-1.4.3           Library for manipulating PNG images
popt-1.16           A getopt(3) like library with a number of enhancements, fro
portaudit-0.5.15    Checks installed ports against a list of security vulnerabi
portdowngrade-0.6_2 Sets a port back to a previous version
portupgrade-2.4.6_4,2 FreeBSD ports/packages administration and management tool s
printproto-1.0.4    Print extension headers
python26-2.6.6      An interpreted object-oriented programming language
recode-3.6_8        Converts files between character sets and usages
renderproto-0.11    RenderProto protocol headers
rrdtool-1.4.4       Round Robin Database Tools
ruby-1.8.7.248_4,1  An object-oriented interpreted scripting language
ruby18-bdb-0.6.5_1  Ruby interface to Sleepycat's Berkeley DB revision 2 or lat
samba-3.0.37_2,1    A free SMB and CIFS client and server for UNIX
schroedinger-1.0.9  High-speed Dirac codec
scr2png-1.2_4       Converts the output of "vidcontrol -p" to PNG
scr2txt-1.2         Converts the output of "vidcontrol -p" to text
screen-4.0.3_8      A multi-screen window manager
smartmontools-5.39.1 S.M.A.R.T. disk monitoring tools
spidermonkey-1.7.0  A standalone JavaScript interpreter from the Mozilla projec
sqlite3-3.7.2       An SQL database engine in a C library
ttf2pt1-3.4.4_2     True Type Font to Postscript Type 1 Converter
unzip-6.0           List, test and extract compressed files in a ZIP archive
webmin-1.520        Web-based interface for system administration for Unix
[root@server-01 /usr/ports/lang/php5]#


When i execute php command:
Code:
[root@server-01 /usr/ports/lang/php5]# php
Segmentation fault: 11 (core dumped)
[root@server-01 /usr/ports/lang/php5]#
I have tried to remove all of apache22 and php, however i am still no further than i was a few hours ago.

Can someone please lend me a hand?

let me know what you are after and i will provide it.

cheers.
 
I'm assuming that your problem is caused by a library-problem (because that's usually the problem). After upgrading all your dependencies for PHP vie [CMD=portmaster] -f php5-5.3.3_2[/CMD] you can be sure that all relevant ports are up-do-date and PHP is linked against the correct library. If that doesn't help, we should start debugging your PHP.
 
hey mate,

thanks for the pointers. unfortunately executing the above command still doesn't help. i try and start apache22 with the php module loaded and it won't start.

is there anything else i can try?

thanks.

Code:
===>>> Done displaying pkg-message files

===>>> The following actions were performed:
        Re-installation of libtool-2.2.10
        Re-installation of libiconv-1.13.1_1
        Re-installation of gettext-0.18.1.1
        Re-installation of gmake-3.81_4
        Installation of devel/libsigsegv (libsigsegv-2.8)
        Re-installation of m4-1.4.15,1
        Re-installation of perl-5.10.1_2
        Re-installation of p5-gettext-1.05_3
        Re-installation of help2man-1.38.2_1
        Re-installation of autoconf-wrapper-20071109
        Re-installation of autoconf-2.67
        Re-installation of pcre-8.10
        Re-installation of pkg-config-0.25_1
        Re-installation of libxml2-2.7.7
        Re-installation of db42-4.2.52_5
        Re-installation of gdbm-1.8.3_3
        Re-installation of automake-wrapper-20071109
        Re-installation of automake-1.9.6_4
        Re-installation of python26-2.6.6
        Re-installation of expat-2.0.1_1
        Re-installation of apr-ipv6-devrandom-gdbm-db42-1.4.2.1.3.9_2
        Re-installation of apache-2.2.16_1
        Re-installation of php5-5.3.3_2

[root@server-01 /usr/ports/ports-mgmt/portmaster]#
 
should i be looking to turn on some more logs to see whats actually happening?

Code:
[root@server-01 /var/log]# tail httpd-error.log 
[Fri Sep 24 18:40:13 2010] [warn] RSA server certificate is a CA certificate (BasicConstraints: CA == TRUE !?)
[Fri Sep 24 18:40:14 2010] [warn] RSA server certificate is a CA certificate (BasicConstraints: CA == TRUE !?)
[Fri Sep 24 18:40:14 2010] [notice] Digest: generating secret for digest authentication ...
[Fri Sep 24 18:40:14 2010] [notice] Digest: done
[Fri Sep 24 18:40:15 2010] [notice] Apache/2.2.16 (FreeBSD) mod_ssl/2.2.16 OpenSSL/0.9.8k DAV/2 configured -- resuming normal operations
[Fri Sep 24 18:40:27 2010] [notice] caught SIGTERM, shutting down
[Fri Sep 24 19:20:34 2010] [warn] RSA server certificate is a CA certificate (BasicConstraints: CA == TRUE !?)
[Fri Sep 24 19:20:35 2010] [warn] RSA server certificate is a CA certificate (BasicConstraints: CA == TRUE !?)
[Fri Sep 24 19:20:47 2010] [warn] RSA server certificate is a CA certificate (BasicConstraints: CA == TRUE !?)
[Fri Sep 24 19:20:48 2010] [warn] RSA server certificate is a CA certificate (BasicConstraints: CA == TRUE !?)
[root@server-01 /var/log]# tail httpd-access.log 
192.168.0.110 - - [24/Sep/2010:18:37:33 +1000] "GET / HTTP/1.1" 304 - "-" "Mozilla/5.0 (Windows; U; Windows NT 6.0; en-US; rv:1.9.2.10) 
Gecko/20100914 Firefox/3.6.10"
192.168.0.110 - - [24/Sep/2010:18:37:33 +1000] "GET / HTTP/1.1" 304 - "-" "Mozilla/5.0 (Windows; U; Windows NT 6.0; en-US; rv:1.9.2.10) 
Gecko/20100914 Firefox/3.6.10"
192.168.0.110 - - [24/Sep/2010:18:37:33 +1000] "GET / HTTP/1.1" 304 - "-" "Mozilla/5.0 (Windows; U; Windows NT 6.0; en-US; rv:1.9.2.10) 
Gecko/20100914 Firefox/3.6.10"
192.168.0.110 - - [24/Sep/2010:18:37:34 +1000] "GET / HTTP/1.1" 304 - "-" "Mozilla/5.0 (Windows; U; Windows NT 6.0; en-US; rv:1.9.2.10) 
Gecko/20100914 Firefox/3.6.10"
192.168.0.110 - - [24/Sep/2010:18:37:34 +1000] "GET / HTTP/1.1" 304 - "-" "Mozilla/5.0 (Windows; U; Windows NT 6.0; en-US; rv:1.9.2.10) 
Gecko/20100914 Firefox/3.6.10"
192.168.0.110 - - [24/Sep/2010:18:37:34 +1000] "GET / HTTP/1.1" 304 - "-" "Mozilla/5.0 (Windows; U; Windows NT 6.0; en-US; rv:1.9.2.10) 
Gecko/20100914 Firefox/3.6.10"
192.168.0.101 - - [24/Sep/2010:18:37:53 +1000] "GET / HTTP/1.1" 304 - "-" "Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.9.2.8) Gecko/20100723 
Ubuntu/10.04 (lucid) Firefox/3.6.8"
192.168.0.101 - - [24/Sep/2010:18:40:15 +1000] "GET / HTTP/1.1" 304 - "-" "Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.9.2.8) Gecko/20100723 
Ubuntu/10.04 (lucid) Firefox/3.6.8"
192.168.0.101 - - [24/Sep/2010:18:40:16 +1000] "GET / HTTP/1.1" 304 - "-" "Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.9.2.8) Gecko/20100723 
Ubuntu/10.04 (lucid) Firefox/3.6.8"
192.168.0.101 - - [24/Sep/2010:18:40:20 +1000] "GET /cacti/ HTTP/1.1" 304 - "-" "Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.9.2.8) 
Gecko/20100723 Ubuntu/10.04 (lucid) Firefox/3.6.8"
[root@server-01 /var/log]# 

[root@server-01 /var/log]# tail messages
Sep 24 19:29:47 server-01 smbd[1085]: [2010/09/24 19:29:47, 0] printing/print_cups.c:cups_connect(69)
Sep 24 19:29:47 server-01 smbd[1085]:   Unable to connect to CUPS server localhost:631 - Connection refused
Sep 24 19:29:47 server-01 smbd[1085]: [2010/09/24 19:29:47, 0] printing/print_cups.c:cups_connect(69)
Sep 24 19:29:47 server-01 smbd[1085]:   Unable to connect to CUPS server localhost:631 - Connection refused
Sep 24 19:30:02 server-01 pid 82440 (php), uid 107: exited on signal 11
Sep 24 19:30:07 server-01 syslog-ng[572]: STATS: dropped 0
Sep 24 19:30:14 server-01 smbd[78399]: [2010/09/24 19:30:14, 0] printing/print_cups.c:cups_connect(69)
Sep 24 19:30:14 server-01 smbd[78399]:   Unable to connect to CUPS server localhost:631 - Connection refused
Sep 24 19:30:14 server-01 smbd[78399]: [2010/09/24 19:30:14, 0] printing/print_cups.c:cups_connect(69)
Sep 24 19:30:14 server-01 smbd[78399]:   Unable to connect to CUPS server localhost:631 - Connection refused
[root@server-01 /var/log]#
 
Thanks Dereckson,

So do you think when i performed the following upgrade command this afternoon (portsnap fetch update && portupgrade -apPDR --batch)
That it could have killed a few ports?

i have the time to recompile the ports, however i am just wondering if that will help.

which command above would you recommend i run?

thanks.
 
The command to pick is a matter of choice, portupgrade and portmaster being the two more popular ports management tool written respectively in ruby and shell script. The two will rebuild all the the ports.

A core dump error is often a problem of shared library, such an executable A calling a not existent entry point from the lib B.

You updated your ports using packages (your -p flag). Packages are binaries, ie already compiled ports. They could have been compiled against a different version of the libraries than those you have installed.

To recompile all (and before suggesting that I checked you weren't in a graphical environment, so indeed it won't be very long) will ensure a binary compatibility between all the software.
 
Thanks for your reply. so you suggest me running:
Code:
# portupgrade -af
or
Code:
# portmaster -af

These will re-compile my system from scratch?

Thanks.
 
Yes, they will recompile your whole system. Since you seem to have mixed a binary with a non-binary upgrade, this is the preferred way to solve your issues.
 
thanks nadja, i will go ahead and kick it off now.

what is the best way to keep my system up to date on a regular basis? should i be compliling form source all the time or from binary is ok?

This command: portsnap fetch update && portupgrade -apPDR --batch
is that installing by source or from a pre-compiled binary?

Thanks.
 
Hi all,

well i have re compiled my whole system with the command portupgrade -af

Still not working for me with php.

I am getting this error in the /var/log/messages
Code:
Sep 24 23:54:25 server-01 pid 1384 (httpd), uid 0: exited on signal 11 (core dumped)
Any other ideas to what could be causing this issue?

thanks.
 
Hi all,

an update. I have upgraded from 8.0 to 8.1 just now. No differance.

Code:
[root@server-01 /home/churchi]# php
Segmentation fault: 11 (core dumped)
[root@server-01 /home/churchi]#

Still getting this bloody core dump error.

not sure what else to do.


Code:
[root@server-01 /home/churchi]# portsnap fetch update && portmaster -a 
Looking up portsnap.FreeBSD.org mirrors... 5 mirrors found.
Fetching snapshot tag from portsnap6.FreeBSD.org... done.
Latest snapshot on server matches what we already have.
No updates needed.
Ports tree is already up to date.
===>>> Gathering distinfo list for installed ports

===>>> Starting check of installed ports for available updates
===>>> All ports are up to date
[root@server-01 /home/churchi]#
 
r_t_f_m said:
Check it out here http://www.pingle.org/2007/09/22/php-crashes-extensions-workaround

You don't have to upgrade everything (again) just run the fixphpextorder.sh

Hope it helps

r_t_f_m, thank you very much. The above script works and fixed up all my issues. i wonder why reordering the extensions php now works. must be really touchy.
anyways things are back to normal now. thank you very much.

DutchDaemon, my apologies mate. i will remember to format all posts before posting next time. thanks for fixing them up.



Thank you to everyone who helped get me back on track. much appreciated.
 
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