Stuck on the undefined reference errors below regarding boost::program_options.
I suspect a tool chain mixing issue (boost compiled with clang, this code with g++5), but haven't been able to find any good references to this error.
Anyone seen a similar problem?
Thanks,
Jason
I suspect a tool chain mixing issue (boost compiled with clang, this code with g++5), but haven't been able to find any good references to this error.
Anyone seen a similar problem?
Thanks,
Jason
Code:
g++5 -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -O2 -msse -msse2 -DUSE_SSE -DMEASURE_DGEMM -DVERBOSE -Wall -fPIC -fopenmp -I/usr/local/include -o StringUtils.o -c StringUtils.cpp
g++5 -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -O2 -msse -msse2 -DUSE_SSE -DMEASURE_DGEMM -DVERBOSE -Wall -fPIC -fopenmp -I/usr/local/include -o Timer.o -c Timer.cpp
g++5 -fstack-protector -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -fopenmp -o bolt BoltMain.o Bolt.o BoltParams.o BoltParEstCV.o BoltReml.o CovariateBasis.o DataMatrix.o FileUtils.o Jackknife.o LDscoreCalibration.o MapInterpolater.o MatrixUtils.o MemoryUtils.o NonlinearOptMulti.o NumericUtils.o PhenoBuilder.o RestrictSnpSet.o SnpData.o SnpInfo.o SpectrumTools.o StatsUtils.o StringUtils.o Timer.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib -lnlopt -lboost_program_options -lboost_iostreams -lz -llapack -lopenblas -lgfortran -lpthread -lm
Bolt.o: In function `long double boost::math::detail::full_igamma_prefix<long double, boost::math::policies::policy<boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> >(long double, long double, boost::math::policies::policy<boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> const&)':
Bolt.cpp:(.text._ZN5boost4math6detail18full_igamma_prefixIeNS0_8policies6policyINS3_13promote_floatILb0EEENS3_14promote_doubleILb0EEENS3_14default_policyES9_S9_S9_S9_S9_S9_S9_S9_S9_S9_EEEET_SB_SB_RKT0_[_ZN5boost4math6detail18full_igamma_prefixIeNS0_8policies6policyINS3_13promote_floatILb0EEENS3_14promote_doubleILb0EEENS3_14default_policyES9_S9_S9_S9_S9_S9_S9_S9_S9_S9_EEEET_SB_SB_RKT0_]+0x68): warning: powl has lower than advertised precision
BoltParams.o: In function `LMM::BoltParams::processCommandLineArgs(int, char**)':
BoltParams.cpp:(.text+0x1fa5): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
BoltParams.cpp:(.text+0x3244): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
BoltParams.cpp:(.text+0x3b2e): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
BoltParams.cpp:(.text+0x42cc): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
BoltParams.cpp:(.text+0x4338): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
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