Ignore that utility. The false positive you are getting is a known issue, and correcting it is on the gnome@ todo list.
You still have to use the normal methods to upgrade ports (ports-mgmt/portupgrade, ports-mgmt/portmaster, ports-mgmt/portmanager) for now.
Take a look at ports-mgmt/pkg_jail. Once you have it setup proper, from within the jail's port tree run:
make package-recursive
Do this for the packages you want, i.e. x11/xorg. It will build packages for everything you need to install xorg without overwriting the ones in your base.
You...
I tried something similar on 9.0-CURRENT but with 8.0-RELEASE as my /compat/i386. My app would run because of a different shlib version in base, which also got me thinking that 64-bit base might not go over well at times with the 32-bit app.
My solution, was to prepend...
There are lots of (mostly Linux) how-tos out there about how to do this which instruct you to replace ${LOCALBASE}/share/icons/gnome/24x24/places/distributor-logo.png. This, of course requires root access and will make pkg_delete complain about checksums. Oh... and you will have to redo it after...
http://www.vendetta-online.com/
The Linux version runs smooth in emulation. I've been meaning to write a how-to for a while. It's really about as simple as your linux-base port, linux-gtk2, and the linux-dri. Doesn't matter which linux kernel you emulate or base port version you choose.
If...
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