That's not a check actually, just ln throwing error about file already existing.
If it only happens with `ln`, try overriding it:env LN='/bin/ln -f' make install.
That will not help, you should just comment out the amr_load="YES" line in /boot/loader.conf *IF* it's how amr was loaded.
OP should probably rebuild the kernel excluding 'device amr' from its config.
Looks like you didn't follow UPDATING after all, specifically following part:
If you use portmaster:
portmaster -o devel/apr1 devel/apr
If you use portupgrade:
portupgrade -f -o devel/apr1 devel/apr
Your paste provides absolutely no info, other than what *you* should do (paste full `make configure` output, paste /usr/ports/x11/libXi/work/libXi-1.3/config.log, paste installed packages list).
You should either run /etc/rc.d/devfs restart after kldload'ing atapicam, or use devfs.rules.
And yes, your /etc/devfs.conf should work if you're loading atapicam using /boot/loader.conf.
service was added to HEAD not so long ago - http://svn.freebsd.org/viewvc/base/head/usr.sbin/service/. I guess you could simply take the script and use it on your system (don't forget to check manpage for bash completion example).
Output from /etc/rc.d/pf that you posted has nothing to do with pf starting twice ("pf enabled" is output from /sbin/pfctl). Can you describe what the problem really is?
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