fail in upgrading GNOME

SIFE · #1 October 7th, 2009, 12:21

Salamo Alikom
i got this MSG when i try to upgrade GNOME

Code:

[root@localhost ~]# portmaster -a gnome-
===>>> Gathering distinfo list for installed ports

===>>> Starting check of installed ports for available updates
===>>> Checking ports for recursive 'make config'
===>>> Launching child to update php_doc-en-20090514 to php_doc-en-20090901

===>>> Port directory: /usr/ports/lang/php_doc
===>>> Launching 'make checksum' for lang/php_doc in background
===>>> Gathering dependency list for lang/php_doc from ports
===>>> No dependencies for lang/php_doc
===>>> Returning to update check of installed ports

===>>> Launching child to update chmlib-0.39_2 to chmlib-0.40

===>>> Port directory: /usr/ports/misc/chmlib
===>>> Launching 'make checksum' for misc/chmlib in background
===>>> Gathering dependency list for misc/chmlib from ports
===>>> Starting recursive 'make config' check
===>>> Recursive 'make config' check complete for misc/chmlib

===>>> Returning to update check of installed ports

===>>> Launching child to update fusefs-kmod-0.3.9.p1.20080208_2 to fusefs-kmod-0.3.9.p1.20080208_6

===>>> Port directory: /usr/ports/sysutils/fusefs-kmod
===>>> Launching 'make checksum' for sysutils/fusefs-kmod in background
===>>> Gathering dependency list for sysutils/fusefs-kmod from ports
===>>> Starting recursive 'make config' check
===>>> Launching child to update fusefs-libs-2.7.3 to fusefs-libs-2.7.4
	fusefs-kmod-0.3.9.p1.20080208_2 >> fusefs-libs-2.7.3

===>>> Port directory: /usr/ports/sysutils/fusefs-libs
===>>> Launching 'make checksum' for sysutils/fusefs-libs in background
===>>> Gathering dependency list for sysutils/fusefs-libs from ports
===>>> Starting recursive 'make config' check
===>>> Recursive 'make config' check complete for sysutils/fusefs-libs
	fusefs-kmod-0.3.9.p1.20080208_2 >> fusefs-libs-2.7.3

===>>> Continuing 'make config' dependency check for sysutils/fusefs-kmod
===>>> Launching child to update textproc/ruby-deplate
	fusefs-kmod-0.3.9.p1.20080208_2 >> textproc/ruby-deplate

===>>> Port directory: /usr/ports/textproc/ruby-deplate
===>>> Launching 'make checksum' for textproc/ruby-deplate in background
===>>> Gathering dependency list for textproc/ruby-deplate from ports
===>>> Starting recursive 'make config' check
===>>> Launching child to update ruby-1.8.6.287,1 to ruby-1.8.7.160_4,1
	fusefs-kmod-0.3.9.p1.20080208_2 >> textproc/ruby-deplate >> ruby-1.8.6.287,1

===>>> Port directory: /usr/ports/lang/ruby18
===>>> Gathering dependency list for lang/ruby18 from ports
===>>> Starting recursive 'make config' check
===>>> Recursive 'make config' check complete for lang/ruby18
	fusefs-kmod-0.3.9.p1.20080208_2 >> textproc/ruby-deplate >> ruby-1.8.6.287,1

===>>> Continuing 'make config' dependency check for textproc/ruby-deplate
===>>> Recursive 'make config' check complete for textproc/ruby-deplate
	fusefs-kmod-0.3.9.p1.20080208_2 >> textproc/ruby-deplate

===>>> Continuing 'make config' dependency check for sysutils/fusefs-kmod
===>>> Recursive 'make config' check complete for sysutils/fusefs-kmod

===>>> Returning to update check of installed ports

===>>> Launching child to update gpac-libgpac-0.4.4,1 to gpac-libgpac-0.4.5_2,1

===>>> Port directory: /usr/ports/multimedia/gpac-libgpac
===>>> Launching 'make checksum' for multimedia/gpac-libgpac in background
===>>> Gathering dependency list for multimedia/gpac-libgpac from ports
===>>> Starting recursive 'make config' check
===>>> Launching child to update libGL-7.0.3 to libGL-7.4.4
	gpac-libgpac-0.4.4,1 >> libGL-7.0.3

===>>> Port directory: /usr/ports/graphics/libGL
===>>> Launching 'make checksum' for graphics/libGL in background
===>>> Gathering dependency list for graphics/libGL from ports
===>>> Starting recursive 'make config' check
===>>> Launching child to update libdrm-2.3.1 to libdrm-2.4.12
	gpac-libgpac-0.4.4,1 >> libGL-7.0.3 >> libdrm-2.3.1

===>>> Port directory: /usr/ports/graphics/libdrm
===>>> Launching 'make checksum' for graphics/libdrm in background
===>>> Gathering dependency list for graphics/libdrm from ports
===>>> Starting recursive 'make config' check
===>>> Recursive 'make config' check complete for graphics/libdrm
	gpac-libgpac-0.4.4,1 >> libGL-7.0.3 >> libdrm-2.3.1

===>>> Continuing 'make config' dependency check for graphics/libGL
===>>> Launching child to update libXext-1.0.3,1 to libXext-1.0.5,1
	gpac-libgpac-0.4.4,1 >> libGL-7.0.3 >> libXext-1.0.3,1

===>>> Port directory: /usr/ports/x11/libXext
===>>> Gathering dependency list for x11/libXext from ports
===>>> Starting recursive 'make config' check
===>>> Launching child to update libXau-1.0.3_2 to libXau-1.0.4
	gpac-libgpac-0.4.4,1 >> libGL-7.0.3 >> libXext-1.0.3,1 >> libXau-1.0.3_2

===>>> Port directory: /usr/ports/x11/libXau
===>>> Gathering dependency list for x11/libXau from ports
===>>> Starting recursive 'make config' check
===>>> Launching child to update font-adobe-100dpi-1.0.0_1 to xproto-7.0.15
	gpac-libgpac-0.4.4,1 >> libGL-7.0.3 >> libXext-1.0.3,1 >> libXau-1.0.3_2 >> font-adobe-100dpi-1.0.0_1

	===>>> No /usr/ports/Binary exists, and no information
	===>>> about Binary can be found in /usr/ports/MOVED

===>>> No valid installed port, or port directory given
===>>> Try portmaster --help


===>>> Update for font-adobe-100dpi-1.0.0_1 failed
===>>> Aborting update

===>>> Update for libXau-1.0.3_2 failed
===>>> Aborting update

===>>> Update for libXext-1.0.3,1 failed
===>>> Aborting update

===>>> Update for libGL-7.0.3 failed
===>>> Aborting update

===>>> Update for gpac-libgpac-0.4.4,1 failed
===>>> Aborting update

Terminated
Terminated

i try to upgrade every single port but i find a new problem mostly .

**SirDice** · #2 October 7th, 2009, 12:32

This doesn't look right:

Code:

Launching child to update font-adobe-100dpi-1.0.0_1 to xproto-7.0.15

Odd as font-adobe-100dpi-1.0.0_1 is already up to date.

SIFE · #3 October 27th, 2009, 16:23

i can't startx after upgrading gnome .

Code:

waiting for X server to shut down FreeFontPath: FPE /usr/local/lib/X11/fonts/misc/ refcount is 2, should be 1; fixing.

if i start GDM i get my desktop GUI restart .

**SirDice** · #4 October 27th, 2009, 16:50

Quote:

Originally Posted by SIFE

Code:

waiting for X server to shut down FreeFontPath: FPE /usr/local/lib/X11/fonts/misc/ refcount is 2, should be 1; fixing.

You can ignore that message. I've been seeing the same one for ages and everything works.

SIFE · #5 October 27th, 2009, 17:59

but i can't get X because the GDM daemon restart it self .

SIFE · #6 November 4th, 2009, 10:06

after upgrading gnome this what i get :

Code:

! devel/pcre (pcre-7.9)	(patch error)
! multimedia/xvid (xvid-1.1.3,1)	(patch error)
! multimedia/libdvdread (libdvdread-0.9.7_3)	(patch error)
! security/gnutls (gnutls-2.4.2_1)	(patch error)
! audio/libvorbis (libvorbis-1.2.0_2,3)	(patch error)
* sysutils/cdrdao (cdrdao-1.2.2)
! x11-fonts/libXfont (libXfont-1.3.1_3,1)	(patch error)
! textproc/libxslt (libxslt-1.1.24_1)	(patch error)
! graphics/jpeg (jpeg-6b_7)	(patch error)
* graphics/tiff (tiff-3.8.2_2)
! devel/popt (popt-1.7_5)	(patch error)
! graphics/libgphoto2 (libgphoto2-2.4.2_1)	(patch error)
* multimedia/libtheora (libtheora-1.0.b2)
! lang/perl5.8 (perl-5.8.8_1)	(patch error)
* devel/p5-Time-HiRes (p5-Time-HiRes-1.9715,1)
! security/libksba (libksba-1.0.3)	(patch error)
! audio/faad (faad2-2.6.1_1,1)	(patch error)
! ftp/curl (curl-7.18.0)	(patch error)
* textproc/p5-XML-NamespaceSupport (p5-XML-NamespaceSupport-1.09_1)
* devel/gamin (gamin-0.1.9_2)
* textproc/p5-XML-Parser (p5-XML-Parser-2.36)
* security/gnupg (gnupg-2.0.9_2)
* textproc/intltool (intltool-0.37.1)
* archivers/p5-Compress-Raw-Zlib (p5-Compress-Raw-Zlib-2.015)
* devel/gio-fam-backend (gio-fam-backend-2.16.5)
* accessibility/atk (atk-1.22.0_1)
* devel/libgtop (libgtop-2.22.3)
! security/nss (nss-3.11.9_2)	(patch error)
* devel/glibmm (glibmm-2.16.4,1)
* multimedia/libdvdnav (libdvdnav-0.1.10_3)
* devel/libIDL (libIDL-0.8.11)
* net/p5-URI (p5-URI-1.37)
* textproc/p5-XML-SAX-Writer (p5-XML-SAX-Writer-0.50)
* security/gpgme (gpgme-1.1.5_1)
* textproc/libxml++26 (libxml++-2.22.0_1)
* www/p5-HTML-Parser (p5-HTML-Parser-3.56_1)
* devel/ORBit2 (ORBit2-2.14.14)
* textproc/libcroco (libcroco-0.6.1_1)
* devel/py-gobject (py25-gobject-2.14.2_2)
* misc/shared-mime-info (shared-mime-info-0.51)
! graphics/cairo (cairo-1.6.4_2,1)	(patch error)
* www/p5-libwww (p5-libwww-5.814)
! graphics/dri (dri-7.0.3_1,2)	(patch error)
* x11-toolkits/pango (pango-1.20.5)
* x11-toolkits/vte (vte-0.16.14_1)
* graphics/py-cairo (py25-cairo-1.6.4)
* x11-toolkits/libwnck (libwnck-2.22.3)
* print/ghostscript8 (ghostscript8-8.62_5)
* print/libspectre (libspectre-0.2.1)
* devel/libglade2 (libglade2-2.6.3)
* devel/py-orbit (py25-orbit-2.14.3_1)
* graphics/libgnomecanvas (libgnomecanvas-2.20.1.1_2)
* x11/libxklavier (libxklavier-3.5_2,1)
! multimedia/gpac-libgpac (gpac-libgpac-0.4.4,1)	(install error)
* devel/dbus-glib (dbus-glib-0.76)
* net/avahi-app (avahi-app-0.6.23)
* textproc/enchant (enchant-1.4.0_1)
* x11-toolkits/py-gtk2 (py25-gtk-2.12.1_1)
* net/avahi-gtk (avahi-gtk-0.6.23)
* x11-toolkits/libsexy (libsexy-0.1.11_1)
* print/libgnomeprint (libgnomeprint-2.18.4_2)
* x11-toolkits/py-gtksourceview (py25-gtksourceview-2.2.0_1)
* devel/libnotify (libnotify-0.4.4_2)
* devel/libbonobo (libbonobo-2.22.0_1)
* accessibility/at-spi (at-spi-1.22.1_2)
* multimedia/x264 (x264-0.0.20080409_2)
* x11-toolkits/libgnomeprintui (libgnomeprintui-2.18.2_2)
* graphics/cairomm (cairomm-1.6.4)
* multimedia/gstreamer (gstreamer-0.10.20)
* multimedia/gstreamer-plugins (gstreamer-plugins-0.10.20_2,3)
* devel/gstreamer-plugins-gio (gstreamer-plugins-gio-0.10.20_2,3)
* x11/xscreensaver-gnome-hacks (xscreensaver-gnome-hacks-5.07)
* multimedia/gstreamer-plugins-bad (gstreamer-plugins-bad-0.10.8_1,3)
* multimedia/gstreamer-plugins-xvid (gstreamer-plugins-xvid-0.10.8_3,3)
* audio/gstreamer-plugins-cdparanoia (gstreamer-plugins-cdparanoia-0.10.20_1,3)
* multimedia/gstreamer-plugins-ugly (gstreamer-plugins-ugly-0.10.9_1,3)
* audio/gstreamer-plugins-a52dec (gstreamer-plugins-a52dec-0.10.9_3,3)
* audio/gstreamer-plugins-mad (gstreamer-plugins-mad-0.10.9_3,3)
* multimedia/gstreamer-plugins-good (gstreamer-plugins-good-0.10.10,3)
* audio/gstreamer-plugins-flac (gstreamer-plugins-flac-0.10.10_4,3)
* graphics/gstreamer-plugins-libpng (gstreamer-plugins-libpng-0.10.10_3,3)
* multimedia/gstreamer-plugins-dvd (gstreamer-plugins-dvd-0.10.9_3,3)
* multimedia/gstreamer-ffmpeg (gstreamer-ffmpeg-0.10.4_1)
* multimedia/ffmpeg (ffmpeg-2008.07.27_7)
* x11-toolkits/gstreamer-plugins-pango (gstreamer-plugins-pango-0.10.20_1,3)
* multimedia/gstreamer-plugins-mpeg2dec (gstreamer-plugins-mpeg2dec-0.10.9_3,3)
* multimedia/py-gstreamer (py25-gstreamer-0.10.12)
* multimedia/gstreamer-plugins-dts (gstreamer-plugins-dts-0.10.8_3,3)
* net/opal (opal-2.2.11)
* graphics/poppler (poppler-0.8.7)
* graphics/poppler-gtk (poppler-gtk-0.8.7)
* multimedia/gstreamer-plugins-theora (gstreamer-plugins-theora-0.10.20_1,3)
* audio/gstreamer-plugins-ogg (gstreamer-plugins-ogg-0.10.20_1,3)
* audio/gstreamer-plugins-vorbis (gstreamer-plugins-vorbis-0.10.20_1,3)
* net-im/telepathy-butterfly (py26-telepathy-butterfly-0.5.1)
* sysutils/policykit (policykit-0.9_1)
* sysutils/consolekit (consolekit-0.2.10_2)
* sysutils/system-tools-backends (system-tools-backends-2.6.0_1)
* x11/zenity (zenity-2.22.1_1)
* sysutils/hal (hal-0.5.11_1)
* devel/liboobs (liboobs-2.22.0_1)
* devel/gconf2 (gconf2-2.22.0_1)
* deskutils/gucharmap (gucharmap-2.22.3)
* devel/libgsf (libgsf-1.14.8_2)
* sysutils/gstreamer-plugins-hal (gstreamer-plugins-hal-0.10.10_4,3)
* devel/gstreamer-plugins-gconf (gstreamer-plugins-gconf-0.10.10_4,3)
* sysutils/policykit-gnome (policykit-gnome-0.9)
* x11-wm/metacity (metacity-2.22.0_2)
* math/gcalctool (gcalctool-5.22.3,2)
* deskutils/notification-daemon (notification-daemon-0.3.7_3)
* devel/libsoup (libsoup-2.4.1_1)
* devel/gstreamer-plugins-soup (gstreamer-plugins-soup-0.10.10_3,3)
* devel/gvfs (gvfs-0.2.5)
* graphics/swfdec (swfdec-0.6.8)
* multimedia/swfdec-gnome (swfdec-gnome-2.22.2_1)
* net/libgweather (libgweather-2.22.3)
* graphics/librsvg2 (librsvg2-2.22.2_2)
* x11/libgnome (libgnome-2.22.0_1)
* x11-toolkits/libbonoboui (libbonoboui-2.22.0_2)
* x11-toolkits/libgnomeui (libgnomeui-2.22.1_2)
* sysutils/gconf-editor (gconf-editor-2.22.0_2,1)
* databases/evolution-data-server (evolution-data-server-2.22.3_1)
* x11/libgnomekbd (libgnomekbd-2.22.0_2)
* accessibility/dasher (dasher-4.7.3_1,2)
* mail/evolution (evolution-2.22.3.1)
* mail/evolution-exchange (evolution-exchange-2.22.3)
* www/evolution-webcal (evolution-webcal-2.21.92_2)
* multimedia/totem-pl-parser (totem-pl-parser-2.22.3_1)
* x11-toolkits/py-gnome2 (py25-gnome-2.22.1)
* multimedia/cheese (cheese-2.22.3)
* x11-fm/nautilus (nautilus-2.22.5.1_1)
* graphics/evince (evince-2.22.2_3)
* audio/gstreamer-plugins-esound (gstreamer-plugins-esound-0.10.10_3,3)
* x11-toolkits/libgail-gnome (libgail-gnome-1.20.0_2)
* accessibility/gok (gok-1.3.7_2,1)
* net/vino (vino-2.22.2_2)
* archivers/file-roller (file-roller-2.22.4,1)
* audio/sound-juicer (sound-juicer-2.22.0_4)
* x11/yelp (yelp-2.22.1_1)
* devel/bug-buddy (bug-buddy-2.22.0_2)
* x11-toolkits/py-gnome-desktop (py25-gnome-desktop-2.22.0_1)
* net/vinagre (vinagre-0.5.1_2)
* accessibility/orca (orca-2.22.3)
* graphics/eog (eog-2.22.3)
* multimedia/totem (totem-2.22.2_2)
* net/ekiga (ekiga-2.0.11_4)
* deskutils/alacarte (alacarte-0.11.5_1)
* deskutils/deskbar-applet (deskbar-applet-2.22.3.1)
* www/epiphany (epiphany-2.22.3)
* editors/gedit (gedit-2.22.3_1)
* accessibility/mousetweaks (mousetweaks-2.22.3)
* security/seahorse (seahorse-2.22.3)

and when i type gdm i get :

Code:

couldn't connect to system bus: Failed to connect to socket /var/run/dbus/system_bus_socket:
No such file or directory .

**SirDice** · #7 November 4th, 2009, 11:15

You might want to review that log. Everything with an ! failed. So I would be very surprised if it actually worked.

The error you are referring to means dbus isn't running. But as I said, I would fix the install errors first before moving on.

SIFE · #8 November 4th, 2009, 17:38

so what do you suggest ?

**SirDice** · #9 November 4th, 2009, 18:15

Start with devel/pcre. I'm wondering why it (and quite a few others) are reporting patch errors.

Make sure your ports tree is up to date. Try and catch the full error. If we can figure that one out I'm sure the rest will be easy.

SIFE · #10 November 5th, 2009, 16:52

i deinstall pcre and then install it from packages but the problem is steal with other packages like curl :

Code:

--->  Upgrading 'curl-7.18.0' to 'curl-7.19.6_1' (ftp/curl)
--->  Building '/usr/ports/ftp/curl'
===>  Cleaning for curl-7.19.6_1
===>  Vulnerability check disabled, database not found
===>  Found saved configuration for curl-7.19.6_1
===>  Extracting for curl-7.19.6_1
=> MD5 Checksum OK for curl-7.19.6.tar.bz2.
=> SHA256 Checksum OK for curl-7.19.6.tar.bz2.
===>   curl-7.19.6_1 depends on file: /usr/local/bin/perl5.8.8 - found
===>  Patching for curl-7.19.6_1
===>   curl-7.19.6_1 depends on file: /usr/local/bin/perl5.8.8 - found
===>  Applying FreeBSD patches for curl-7.19.6_1
3 out of 3 hunks failed--saving rejects to configure.rej
=> Patch patch-configure failed to apply cleanly.
=> Patch(es) patch-Makefile.in applied cleanly.
*** Error code 1

Stop in /usr/ports/ftp/curl.
*** Error code 1

Stop in /usr/ports/ftp/curl.
	! ftp/curl (curl-7.18.0)	(patch error)

zeiz · #11 November 12th, 2009, 18:00

old enough thread... but instead of fighting with broken broken X installation I would go to single user mode and

Code:

# ee /etc/rc.conf

comment out gnome_enable line and if I had gdm_enable line (instead of gnome_enable) I would check at once is there 2 lines required:

Code:

dbus_enable="YES"
hald_enable="YES

Then I would reboot to console (without X) and

Code:

# portsnap fetch update

Next step:

Code:

# pkgdb -F

If everything is fine (or after fixing):

Code:

# portupgrade -aP

Finally uncomment back gnome/gdm in rc.conf and reboot.
If same problems again I would delete all packages and then reinstall X and Gnome:

Code:

# pkg_delete -df --all
# pkg_add portupgrade
# pkg_add xorg
# pkg_add gnome2

SIFE · #12 November 14th, 2009, 18:43

Salamop Alikom
fanily i get my gnome with small problems that does not fix to now .
i found my ports was broken for that i get error "Applying FreeBSD patches error " so update again :

Code:

portsnap fetch extract

then i fix the pkgdb :

Code:

pkgdb -F

the default python version now is 26 so i unistall the old one and install the new one via packages :

Code:

pkg_add -r python26

now i upgrade perl and theire depend it :

Code:

portupgrade -rR "*perl*"

Code:

portupgrade -rR "p5-"

then i upgrade python and theire depend it :

Code:

portupgrade -rR "*py*"

Code:

portupgrade -rR "*python*"

the i upgrade all library installed in my system :

Code:

portupgrade -rR "lib*"

now upgrading X and depend it :

Code:

portupgrade -rR '*xorg*'

finaly i upgrade gnome and all packages in the system :

Code:

portupgrade -rR "*gnome*"

Code:

portupgrade -arR

NOTE :
i redirect outputs to file to catch packages fails to upgrade after that i deinstall it and then install it manually via ports or packages if that necessary .
audio-juicer i get this problem when i compile it from ports :

Code:

/usr/local/lib/libcanberra.so: undefined reference to `strndup@FBSD_1.1'
gmake[2]: *** [sound-juicer] Error 1
gmake[2]: Leaving directory `/usr/ports/audio/sound-juicer/work/sound-juicer-2.26.1/src'
gmake[1]: *** [all-recursive] Error 1
gmake[1]: Leaving directory `/usr/ports/audio/sound-juicer/work/sound-juicer-2.26.1'
gmake: *** [all] Error 2
*** Error code 1

Stop in /usr/ports/audio/sound-juicer.
** Command failed [exit code 1]: /usr/bin/script -qa /tmp/portinstall20091112-8016-4radzh-0 env make
** Fix the problem and try again.
** Listing the failed packages (-:ignored / *:skipped / !:failed)
	! audio/sound-juicer	(linker error)
Command failed [exit code 1]: /usr/local/sbin/portinstall audio/sound-juicer

problem still not fixed yet :
System Monitor does not work .
when i login to gnome i have to kill pulseaudio even after compiling kernel 7.2-STABLE .
if i run VirtualBox i get this :

Code:

VirtualBox: supR3HardenedMainGetTrustedMain: dlopen("/usr/local/lib/virtualbox/VirtualBox.so",) 
failed: /usr/local/lib/virtualbox/VBoxXPCOM.so: Undefined symbol "shmctl"

i get my GUI via startx not GDM .

zeiz · #13 November 15th, 2009, 03:28

Quote:

A lady came to a store and asked a salesperson for 30' long night-robe.
"Of course we can order such a piece for you but...why?" "You know, my husband is a scientist. For him research is important not the result".

What is your goal?

dennylin93 · #14 November 15th, 2009, 07:21

Quote:

Originally Posted by SIFE

.
if i run VirtualBox i get this :

Code:

VirtualBox: supR3HardenedMainGetTrustedMain: dlopen("/usr/local/lib/virtualbox/VirtualBox.so",) 
failed: /usr/local/lib/virtualbox/VBoxXPCOM.so: Undefined symbol "shmctl"

Perhaps this is related to something in /usr/include/. Did you remove any header files?

SIFE · #15 November 15th, 2009, 07:46

no , i didn't .

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wine installation fail	Slesarev	Installation and Maintenance of FreeBSD Ports or Packages	5	March 4th, 2009 22:04
Fail to compile kernel in Freebsd 7.0 R	ohcarol	Installing & Upgrading	4	February 19th, 2009 17:45